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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium .pdf
Ballgown bridges the gap between transcriptome assembly and expression analysis.pdf
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.pdf
edgeR- a Bioconductor package for differential expression analysis of digital gene expression data.pdf
ENCODE_RNAseq_Standards_V1.0.pdf
Full-length transcriptome assembly from RNA-Seq data without a reference genome.pdf
HISAT- a fast spliced aligner with low memory requirements.pdf
HTSeq—a Python framework to work with high-throughput sequencing data.pdf
Informatics for RNA Sequencing- A Web Resource for Analysis on the Cloud.pdf
Integrative Genomics Viewer (IGV)- high-performance genomics data visualization and exploration.pdf
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.pdf
TACO produces robust multi-sample transcriptome assemblies from RNA-seq.pdf
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.pdf
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